Files in mrc-ide/mcstate

Monte Carlo Methods for State Space Models

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/make-release.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

.lintr

DESCRIPTION

LICENSE

Makefile

NAMESPACE

NEWS.md R/adaptive_proposal.R R/arrays.R R/deterministic.R R/deterministic_state.R R/if2.R R/if2_control.R R/if2_parameters.R R/particle_filter.R R/particle_filter_data.R R/particle_filter_initial.R R/particle_filter_multistage.R R/particle_filter_state.R R/pmcmc.R R/pmcmc_chains.R R/pmcmc_control.R R/pmcmc_parallel.R R/pmcmc_parameters.R R/pmcmc_parameters_nested.R R/pmcmc_state.R R/pmcmc_tools.R R/pmcmc_utils.R R/pmcmc_varied_parameter.R R/predict.R R/smc2.R R/smc2_control.R R/smc2_parameters.R R/trajectories.R R/utils.R R/utils_assert.R README.md

inst/WORDLIST

inst/nested_sir_incidence.csv

inst/sir_incidence.csv

inst/sir_prevalence.csv

man-roxygen/example-smc2.R man/adaptive_proposal_control.Rd man/array_bind.Rd man/array_drop.Rd man/array_flatten.Rd man/array_reshape.Rd

man/figures/logo.png

man/if2.Rd man/if2_control.Rd man/if2_parameter.Rd man/if2_parameters.Rd man/multistage_epoch.Rd man/multistage_parameters.Rd man/particle_deterministic.Rd man/particle_deterministic_state.Rd man/particle_filter.Rd man/particle_filter_data.Rd man/particle_filter_initial.Rd man/particle_filter_state.Rd man/pmcmc.Rd man/pmcmc_chains.Rd man/pmcmc_combine.Rd man/pmcmc_control.Rd man/pmcmc_parameter.Rd man/pmcmc_parameters.Rd man/pmcmc_parameters_nested.Rd man/pmcmc_predict.Rd man/pmcmc_thin.Rd man/pmcmc_varied_parameter.Rd man/smc2.Rd man/smc2_control.Rd man/smc2_parameter.Rd man/smc2_parameters.Rd

mcstate.Rproj

scripts/generate_vignette_data.R

scripts/update_web.sh

tests/testthat.R

tests/testthat/compare_variable.cpp

tests/testthat/helper-mcstate.R

tests/testthat/malaria/casedata_monthly.csv

tests/testthat/malaria/malariamodel.R tests/testthat/test-adaptive-proposal.R tests/testthat/test-arrays.R tests/testthat/test-deterministic-multistage.R tests/testthat/test-deterministic-nested.R tests/testthat/test-deterministic.R tests/testthat/test-if2-control.R tests/testthat/test-if2-parameters.R tests/testthat/test-if2.R tests/testthat/test-particle-filter-data.R tests/testthat/test-particle-filter-multistage-pars.R tests/testthat/test-particle-filter-multistage.R tests/testthat/test-particle-filter.R tests/testthat/test-pmcmc-chains.R tests/testthat/test-pmcmc-control.R tests/testthat/test-pmcmc-nested.R tests/testthat/test-pmcmc-parallel.R tests/testthat/test-pmcmc-parameters-nested.R tests/testthat/test-pmcmc-parameters.R tests/testthat/test-pmcmc-support.R tests/testthat/test-pmcmc-tools.R tests/testthat/test-pmcmc-utils.R tests/testthat/test-pmcmc.R tests/testthat/test-predict.R tests/testthat/test-smc2-parameters.R tests/testthat/test-smc2.R tests/testthat/test-utils-assert.R tests/testthat/test-utils.R

vignettes/.gitignore

vignettes/continuous.Rmd

vignettes/death_data.csv

vignettes/deaths.R

vignettes/deaths_true_history.rds

vignettes/deterministic.Rmd vignettes/if2.Rmd vignettes/kalman.Rmd vignettes/nested_sir_models.Rmd

vignettes/nested_sir_true_history.rds

vignettes/parallelisation.Rmd vignettes/restart.Rmd vignettes/sir_models.Rmd

vignettes/sir_true_history.rds

mrc-ide/mcstate documentation built on April 18, 2024, 3:01 a.m.