build_taxa.barplot: Build summary taxa barplots from network abundance data

In mselensky/bngal: Biological Network Graphing and Learning

Build summary taxa barplots from network abundance data

Description

Build summary taxa barplots from network abundance data

Usage

build_taxa.barplot(
  plotdata,
  tax.level,
  dendrogram,
  fill.by = "phylum",
  interactive = TRUE,
  out.dr,
  metadata.cols,
  other.variable
)

Arguments

plotdata	Output from ebc_compositions
tax.level	Taxonomic level
dendrogram	Output from build_dendrograms
fill.by	Fill option for summary barplot. Can be one of "phylum" (to fill by phylum abundance), "ebc" (to fill by edge between cluster abundance), or "grouping" (to fill by family-level functional groupings). "grouping" is only available for family-level and below.
interactive	If TRUE, plot exported as interactive HTML file. If FALSE, plot exported as PDF. Default = TRUE.
out.dr	Output directory
other.variable

mselensky/bngal documentation built on June 3, 2024, 6:27 a.m.