ebc_compositions: Calculate compositions of edge between clusters based on...

In mselensky/bngal: Biological Network Graphing and Learning

Calculate compositions of edge between clusters based on defined metadata column(s)

Description

Calculate compositions of edge between clusters based on defined metadata column(s)

Usage

ebc_compositions(
  ebc.nodes,
  binned.taxonomy,
  alpha.div,
  tax.level,
  metadata,
  metadata.cols,
  sub.comms
)

Arguments

ebc.nodes	Output from extract_node_data()
binned.taxonomy	Output from bin_taxonomy()
tax.level	Taxonomic level of classification at which to calculate EBC compositions
sub.comms	(Optional) Metadata column by which to split data into subcommunities

mselensky/bngal documentation built on June 3, 2024, 6:27 a.m.