color_nodes: Color network nodes by edge between cluster ID and phylum
In mselensky/bngal: Biological Network Graphing and Learning

color_nodes

R Documentation

Color network nodes by edge between cluster ID and phylum

Description

This function colors network nodes by phylum and by edge between cluster using the defaul bngal color schemes. A custom list of phylum colors can optionally be provided (see phylum.colors option).

Usage

color_nodes(binned.tax, clusters.to.color, phylum.colors)

Arguments

binned.tax

Output from bin_taxonomy()

clusters.to.color

Output from get_ebc_clusters()

phylum.colors

Optional Dataframe with hex color codes assigned to each phylum in the Silva 16S rRNA gene database (v. 138). Default color scheme provided, but if a custom color scheme is desired, columns must be the following:

phylum: name of phylum in Silva database
phylum_color: color hexcode, including ⁠#⁠
phylum_order: desired order for downstream plots