export_cluster_data: Export filtered edge between cluster abundance data

In mselensky/bngal: Biological Network Graphing and Learning

Export filtered edge between cluster abundance data

Description

This function returns a list of nodes (i.e., taxa) at each level of taxonomic classification, split by their statistical distributions into four categories listed below (defined by the option quantile.cutoff) :

• high.core_high.abun : Nodes with high coreness and high abundance

• high.core_low.abun : Nodes with high coreness and low abundance

• low.core_high.abun : Nodes with low coreness and high abundance

• low.core_low.abun : Nodes with low coreness and low abundance

Usage

export_cluster_data(ebc.comp.data, quantile.cutoff)

Arguments

ebc.comp.data	Output from bngal::calc_ebc_comps()
quantile.cutoff	(numeric) Quantile distribution cutoff for coreness/abundance data: 1: 0-25% 2: 25-50% 3: 50-75% 4: 75-100%

Examples

export_cluster_data(ebc_composition_data, 4)

mselensky/bngal documentation built on June 3, 2024, 6:27 a.m.