prepare_corr_data: Filter preprocessed data for correlation matrix

View source: R/prepare_corr_data.R

prepare_corr_dataR Documentation

Filter preprocessed data for correlation matrix

Description

This function filters input data and returns a normalized abundance matrix.

Usage

prepare_corr_data(prepared.data, obs.cutoff, transformation, out.dr, cores = 1)

Arguments

prepared.data

Output from prepare_network_data or split_network_data

obs.cutoff

Optional Minimum number of observations required per pairwise relationship to be included in correlation matrix (default = 10).

transformation

Optional Numeric transformation to apply to data (default = none). "log10" accepted.

out.dr

Required. Output directory for pairwise summary data.

Details

The parameter obs.cutoff refers to the minimum number of observations per pairwise relationship required for inclusion in the output matrix.

Examples

prepare_corr_data(prepared.data, obs.cutoff, transformation, out.dr)

mselensky/bngal documentation built on June 3, 2024, 6:27 a.m.