prepare_net_features: Preprocess network edge data

In mselensky/bngal: Biological Network Graphing and Learning

Preprocess network edge data

Description

This function preprocesses edge and node data, combining both outputs into a list object to be used in downstream functions, such as get_igraph().

Usage

prepare_net_features(
  edges.,
  node.ids,
  p.val.cutoff,
  correlation,
  correlation.cutoff,
  sign
)

Arguments

edges.	Output from generate_edges()
node.ids	Output from get_node_ids()
p.val.cutoff	Any pairwise comparison with a p-value greater than this value will be dropped
correlation	Metric for pairwise comparisions (see Hmisc::rcorr())
correlation.cutoff	Values from 0 to 1 accepted. Only relationships with an absolute value of this or greater are kept.
sign	Direction(s) of pairwise relationship to include in network. Values from "positive", "negative", or "all" accepted.

mselensky/bngal documentation built on June 3, 2024, 6:27 a.m.