API for mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

Global functions
bnmf	Man page Source code
bnmf_iterate	Source code
catalog,tempoSig-method	Man page
cosineSimilarity	Man page Source code
diluteUltraMutated	Source code
dinucleotides	Man page Source code
expos,tempoSig-method	Man page
extractSig	Man page Source code
filterExposure	Man page Source code
filterFP	Man page Source code
fitMLE	Man page Source code
hyper_update	Source code
init	Source code
kstar	Man page Source code
likelihood	Source code
logLik,tempoSig-method	Man page
maf2cat	Man page Source code
maf2cat3	Man page Source code
misc,tempoSig-method	Man page
mlestimate	Source code
mutationalCone	Man page Source code
nmf	Man page Source code
nmf_updateR	Source code
ntdag	Source code
pgnmf	Man page Source code
plotExposure	Man page Source code
plot_M80	Man page Source code
powerEstimate	Man page Source code
powerPlot	Man page Source code
pvalue,tempoSig-method	Man page
rcmp	Source code
readMAFforcat	Man page Source code
row2Column	Man page Source code
run_tSig	Man page Source code
senspec	Man page Source code
show,tempoSig-method	Man page
signat,tempoSig-method	Man page
sigplot	Man page Source code
simulateCatalog	Source code
simulateSpectra	Man page Source code
slope	Source code
tempoSig	Man page Source code
tempoSig-class	Man page
tmb,tempoSig-method	Man page
trinucleotides	Man page Source code
vb_init	Source code
vbnmf_update	Source code
vbnmf_updateR	Source code
vectorPad	Source code
writeExposure	Man page Source code

mskcc/tempoSig documentation built on Feb. 3, 2023, 8:35 a.m.

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