writeExposure: Write Exposure

In mskcc/tempoSig: Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

Write Exposure

Description

Save a text output of exposures

Usage

writeExposure(
  object,
  output,
  sep = "\t",
  rm.na = FALSE,
  pv.out = NULL,
  cBio.format = FALSE
)

Arguments

object	Object of class tempoSig
output	File name of the output
sep	Delimiter, either space or tab.
rm.na	Remove rows with NAs (mutation load below minimum)
pv.out	File name for p-value output. If NULL, output file is written with alternating observed and p-value columns.
cBio.format	File output in cBioPortal Generic Assay format; only works with pv.out != NULL

Details

Writes a text file of specified name.

mskcc/tempoSig documentation built on Feb. 3, 2023, 8:35 a.m.