readMAFforcat: Read MAF file and Fix Chromosome Names
In mskcc/tempoSig: Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures
readMAFforcat R Documentation
Read MAF file and Fix Chromosome Names
Description
This function is a wrapper intended for use in maf2cat3, which requires chromosome names
compatible with BSgenome.Hsapiens.UCSC.hg19 (chr1, ..., chrX, chrY).
Usage
readMAFforcat(maf)
Arguments
maf
MAF file path
Value
Data frame with chromosome names fixed
Examples
maf <- system.file('extdata', 'brca.maf', package = 'tempoSig')
maf <- readMAFforcat(maf)
head(maf)
mskcc/tempoSig documentation built on Feb. 3, 2023, 8:35 a.m.
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| readMAFforcat | R Documentation |
Read MAF file and Fix Chromosome Names
Description
This function is a wrapper intended for use in maf2cat3, which requires chromosome names
compatible with BSgenome.Hsapiens.UCSC.hg19 (chr1, ..., chrX, chrY).
Usage
readMAFforcat(maf)
Arguments
maf |
MAF file path |
Value
Data frame with chromosome names fixed
Examples
maf <- system.file('extdata', 'brca.maf', package = 'tempoSig')
maf <- readMAFforcat(maf)
head(maf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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