Files in mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

DESCRIPTION

Dockerfile

NAMESPACE

NEWS

R/Allclasses.R R/RcppExports.R R/bayesian.R R/epower.R R/extract.R R/hnmf.R R/pcawg.R R/pgnmf.R R/plot_m80.R R/refitting.R R/spectra.R R/tempoSig.R R/utilities.R R/utilities2.R R/utilities3.R R/wrappers.R README.md

data/pcawg.RData

exec/maf2cat.R exec/maf2cat2.R exec/maf2cat3.R exec/pgback.R exec/tempoSig.R

inst/extdata/Acoeff.txt

inst/extdata/Acoeff_v2.txt

inst/extdata/Bcoeff.txt

inst/extdata/Bcoeff_v2.txt

inst/extdata/Fmin.txt

inst/extdata/Mcoeff.txt

inst/extdata/Mcoeff_v2.txt

inst/extdata/SBS_SA_etiol.csv

inst/extdata/SBS_cosmic_v3.1.txt

inst/extdata/Signature_v2_etiol.txt

inst/extdata/cosmic_SigAnalyzer_SBS_signatures.txt

inst/extdata/cosmic_sigProfiler_SBS_signatures.txt

inst/extdata/cosmic_sigProfiler_SBS_signatures_v3.1.txt

inst/extdata/cosmic_sigProfiler_exome_SBS_signatures.txt

inst/extdata/cosmic_snv_signatures_v2.txt

inst/extdata/hmean_breast_lung_skin_pancr.txt

inst/extdata/msig_cBioPortal_v2.csv

inst/extdata/msig_cBioPortal_v3.csv

inst/extdata/pig_K11.rds

inst/extdata/pig_K11_cutoff.txt

inst/extdata/tcga-brca_catalog.txt

inst/extdata/tcga_brca_mutect_catalog.txt

old/cosim6.png

old/msig_vs_cli.png

old/tempoSig.html

old/tempoSig_files/figure-html/expos_plot-1.png

old/time_cli.png

src/Makevars

src/RcppExports.cpp

src/header.h

src/mlestimate.cpp

src/vbnmf_update.cpp

vignettes/refs.bib

vignettes/tempoSig.Rmd

mskcc/tempoSig documentation built on Feb. 3, 2023, 8:35 a.m.

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mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

Files in mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

R Package Documentation

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mskcc/tempoSig Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

Files in mskcc/tempoSig Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

R Package Documentation

Browse R Packages

We want your feedback!

mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures

Files in mskcc/tempoSig
Maximum Likelihood Fitting of Mutational Catalogs and De Novo Inference of Signatures