Description Usage Arguments Examples
For each contratst in ebfit, a matrix with lgFCH, FCH,pvalue , fdr and Status (1 up,-1 doen,0 non sign) is created using pre-specified cut-oofs
1 2 | FromEbfit2Table(ebfit, adj = "BH", mcut = 2, pcut = 0.05, annot = FALSE,
annotTab = NULL)
|
ebfit |
output of eBayes |
adj |
adjustment method for multiple hypothesis |
mcut |
cutoff for FCH (to be used for Status columns) |
pcut |
cutoff for pvalue/FDR (to be used for Status columns) |
annot |
should the dat be annotated? If TRUE it will check if tehre is annotTab or otherwise whatever annotation is stored in ebfit$genes |
annotTab |
annotation database |
1 | Tab<-FromEbfit2Table(ebfit,pcut=0.05,mcut=2)
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