Description Usage Arguments Examples
This function does cross annotation of a top table of mouse DEGs to human gene Symbols, making use of biomaRt
1 2 3 4 5 | annoXMouseHuman(top = top.A.flakVSflg, mouse = "mmusculus_gene_ensembl",
human = "hsapiens_gene_ensembl", mouse.attr.in = c("ensembl_gene_id",
"mgi_symbol"), human.attr.in = c("ensembl_gene_id", "hgnc_symbol",
"wikigene_description"), top.tab = TRUE,
AnnPkg = "mogene21sttranscriptcluster.db")
|
top |
Top table as derived by calling the function toptable on an ebayes fit object |
mouse |
The mouse mart to use in the biomaRt function |
human |
The human mart to use in the biomaRt function |
mouse.attr.in |
Mouse attributes to use from biomaRt. |
human.attr.in |
Human attributes to use from biomaRt. |
top.tab |
TRUE/FALSE if "top" is actually a top table |
AnnPkg |
Mouse eset annotation package. So which package was used to annotate the mouse expression set. |
1 | annoXMouseHuman(top=top.A.flakVSflg)
|
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