DoHeatmap: A function that draws a heatmap based on a matrix
In mssm-msf-2019/BiostatsALL:

a function that is supposed to draw a heatmap based on a matrix of gene expressions

DoHeatmap(mat, facsepr = NULL, colfac, symb = NULL, dmeth = cor.dist,
  hmeth = "average", cex.genes = 0.5, margins = c(5, 15), ColD = FALSE,
  main = "", scl = "row", breaks = NULL, cexCol = 1,
  colscheme = "gray", ...)

`mat`	a matrix with genes in the rows and samples in the columns
`facsepr`	a factor in the phenotype data that separates columns in the heatmap
`colfac`	a factor in the phenotype data that will add colors to the top according to different levels
`symb`	a character vector that indicates gene symbols for each row
`dmeth`	the method to measure distance between matrices rows
`hmeth`	the method for the hierarchical clustering
`cex.genes`	is the proportion to which genes symbols should be expanded in the graphic
`margins`	is the definition of vertical and horizontal margins to plot the heatmap
`ColD`	is a logical parameter that indicates if the columns should be clustered
`main`	is the title for the heatmap
`scl`	is an indicator if data should be scaled by row, column or both
`breaks`	enable color transition at specified limits
`cexCol`	is the proportion to which columns labels should be expanded in the graphic
`colscheme`	is the schema for colors in the body of the heatmap

1
2

DoHeatmap(mat = exprs(eset),facsepr = mygroup1, colfac = mygroup2, symb = genesymbols, dmeth=cor.dist, hmeth='average',
cex.genes=0.5, margins = c(5,15), main='', scl = row, breaks = NULL, cexCol = 1, colscheme = 'gray')