Create_GSEAInput: A function that creates ranked files for GSEA
In mssm-msf-2019/BiostatsALL:
Description
Usage
Arguments
Examples
Description
a function that eliminates ambiguity in gene symbols and prepares preRanked Gsea files for different contrasts
depends on getMat and myfindLargest
Usage
1
Create_GSEAInput(coefs, ann, fname)
Arguments
coefs
a matrix with coefficients of a linear model
ann
is the package with annotation for the platform that is being used
fname
is the prefix for the files to be output
Examples
1
prepareGSEArnk(coefs = coefs, Annpkg = hgu133plus2.db, fname='mycontrasts',symbs='NULL')
mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.
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Description Usage Arguments Examples
Description
a function that eliminates ambiguity in gene symbols and prepares preRanked Gsea files for different contrasts depends on getMat and myfindLargest
Usage
1 | Create_GSEAInput(coefs, ann, fname)
|
Arguments
coefs |
a matrix with coefficients of a linear model |
ann |
is the package with annotation for the platform that is being used |
fname |
is the prefix for the files to be output |
Examples
1 | prepareGSEArnk(coefs = coefs, Annpkg = hgu133plus2.db, fname='mycontrasts',symbs='NULL')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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