dowordcloud: Creates a wordcloud representin Fold changes and color coded...

Description Usage Arguments Examples

Description

the features in vars will have size proportional to the column Estimate in Dmat and color coded to column pvalues. Positive estimates (up-regulated) will be in shades of red depending on significance, and negative estimates (down-regulated) will be in shades of blue)

Usage

1
2
3
4
dowordcloud(vars, Dmat, title, addFCH = NULL, logEst = FALSE,
  leg_wcloud = c("Up-(p>0.1)", "Up-(p<0.1)", "Up-(p<0.05)", "Down-(p>0.1)",
  "Down-(p<0.1)", "Down-(p<0.05)"), col_wcloud = c("lightpink2", "red",
  "darkred", "lightblue", "deepskyblue2", "blue3"))

Arguments

vars

variables to add to wordcloud

Dmat

matrix where rows are features to appear as words and columns are elements of the comparison to be used. column Estimate and pvalue will be used for size/colors of words

addFCH

it contains numbers that will be ploted as to give an idea of which fold changes represents teh size.

logEst

should be False unless to want to size it by log2 scale

leg_wcloud

legend for colors

col_wcloud

colors

Examples

1

mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.