prepareGSEArnk: A function that prepares GSEA ranked data

Description Usage Arguments Examples

Description

a function that prepares preRanked Gsea files for different contrasts

Usage

1
prepareGSEArnk(coefs, Annpkg = NULL, fname, symbs = NULL)

Arguments

Annpkg

is the package with annotation for the platform that is being used

fname

is the prefix for the files to be output

symbs

is a vector with genes symbols

coef

a matrix with coefficients of a linear model

Examples

1
prepareGSEArnk(coefs = coefs, Annpkg = hgu133plus2.db, fname='mycontrasts',symbs=NULL)

mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.