annovarAnnotation: annovarAnnotation
In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)

R parser for Annovar

annovarAnnotation(
  vcf,
  out_vcf,
  threads,
  annovar = "/imppc/labs/lplab/share/bin/annovar",
  humandb = "/imppc/labs/lplab/share/bin/annovar/humandb",
  perl = "perl"
)

`vcf`	Vcf file to annotate
`out_vcf`	Path where to save the annotated vcf.
`threads`	Number of threads to use in the analysis.
`annovar`	Path to the annovar binary folder.
`humandb`	Path to the annovar huban database.
`perl`	Path of perl executable.

## Not run: 
annovarAnnotation(vcf = 'NET-11_out_strelka2_indels_postCalling.vcf',
                  out_vcf = 'NET-11_annotated.vcf',
                  threads = 2)

## End(Not run)