samtoolsIndex: sambambaIndex
In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)

Generate BAM index if it is not present using sambamba

1	samtoolsIndex(bam, threads, samtools)

`threads`	Number of threads to use in the analysis.
`samtools`	Path of samtools binary.

## Not run: 
sambambaIndex(bam = 'raw/sample_tumor.bam',
            threads = 2,
            sambamba = '/bin/sambamba')

## End(Not run)

msubirana/ergWgsTools documentation built on June 8, 2020, 8:07 a.m.

msubirana/ergWgsTools index

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