bamCoverage: bamCoverage
In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Examples
Description
Parser of DeepTools BamCounter for R
Usage
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bamCoverage(
deep_tools = "/imppc/labs/lplab/share/bin/anaconda3/bin/activate",
bam,
cores = 2,
out_path
)
Arguments
deep_tools
Path to the activate file of the deeptools virtual environment
bam
Bam file to generate the bam counts
cores
Number of cores used in the analysis
out_path
Path where to save the output bigWig. It will be saved with the same base
name as bam and ".bw" extension.
Examples
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out_path <- '/counts
bam <- '/raw/sample.bam
bamCoverage(bam, out_path)
msubirana/ergWgsTools documentation built on June 8, 2020, 8:07 a.m.
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Description Usage Arguments Examples
Description
Parser of DeepTools BamCounter for R
Usage
1 2 3 4 5 6 | bamCoverage(
deep_tools = "/imppc/labs/lplab/share/bin/anaconda3/bin/activate",
bam,
cores = 2,
out_path
)
|
Arguments
deep_tools |
Path to the activate file of the deeptools virtual environment |
bam |
Bam file to generate the bam counts |
cores |
Number of cores used in the analysis |
out_path |
Path where to save the output bigWig. It will be saved with the same base name as bam and ".bw" extension. |
Examples
1 2 3 4 | out_path <- '/counts
bam <- '/raw/sample.bam
bamCoverage(bam, out_path)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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