filterPass: filterPass
In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Examples
Description
Bcftools filter parser for only keeping PASS variants of a VCF.
Usage
1
filterPass(bcftools = "bcftools", vcf, pass_vcf)
Arguments
vcf
Vcf to filter
out_path
Path where to save the output vcf
Examples
1
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5
## Not run:
filterPass(vcf = 'raw/sample_tumor.vcf',
out_path = 'pass_vcf')
## End(Not run)
msubirana/ergWgsTools documentation built on June 8, 2020, 8:07 a.m.
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Description Usage Arguments Examples
Description
Bcftools filter parser for only keeping PASS variants of a VCF.
Usage
1 | filterPass(bcftools = "bcftools", vcf, pass_vcf)
|
Arguments
vcf |
Vcf to filter |
out_path |
Path where to save the output vcf |
Examples
1 2 3 4 5 | ## Not run:
filterPass(vcf = 'raw/sample_tumor.vcf',
out_path = 'pass_vcf')
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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