bcftoolsReheader: bcftoolsReheader

In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)

Description

Parser for bcftools reheader

Usage

bcftoolsReheader(
  bcftools,
  vcf,
  vcf_new_names = c("NORMAL", "TUMOR"),
  reheadered_vcf
)

Arguments

vcf	Vcf to reheader.
vcf_new_names	Vector with the new sample names to define in the vcf header.
reheadered_vcf	Path where to save the reheared vcf.

Examples

## Not run: 
bcftoolsReheader(bcftools = 'bcftools', vcf = 'sample.vcf', vcf_new_names = c('NORMAL', 'TUMOR'), reheadered_vcf = 'sample_rh.vcf')

## End(Not run)

msubirana/ergWgsTools documentation built on June 8, 2020, 8:07 a.m.