oncodrivefml: oncodrivefml

In msubirana/ergWgsTools: What the Package Does (One Line, Title Case)

Description

Parser for oncodrivefml.

Usage

oncodrivefml(input, elements, output_dir, sequencing = "wgs", configuration)

Arguments

input	File containing mutations
elements	GZIP compressed file with the genomic elements to analyze
output_dir	Output directory to be created
sequencing	Type of sequencing. Allowd 'wgs', 'wes' 'targeted'. By default='wgs'.
configuration	Path to configuration file.

Examples

## Not run: 
oncodrivefml(input = 'all_ins.tvs', elements = 'elements.elements', output_dir = 'rst/')

## End(Not run)

msubirana/ergWgsTools documentation built on June 8, 2020, 8:07 a.m.