Man pages for najha/CELLector
Genomics guided selection of cancer cell lines
| CELLector.buildModelMatrix | Mapping cell lines on the CELLector searching space |
| CELLector.buildModelMatrix_Partitioned | Mapping cell lines on the partitioned CELLector searching... |
| CELLector.Build_Search_Space | CELLector search space construction |
| CELLector.Build_Search_Space_Partitioned | CELLector partitioned search space derivation |
| CELLector.CellLine.BEMs | Cell Lines' Binary Genomic Event Matrices |
| CELLector.CellLine.BEMs_v2 | Cell Lines' Binary Genomic/Epigenomic Event Matrices |
| CELLector.CELLline_buildBEM | Building a Genomic Binary Event Matrix (BEM) for in-vitro... |
| CELLector.CellLinesVarCatalog | Built-in Cell Line variants' catalogue |
| CELLector.CFEs | Cancer Functional Events |
| CELLector.CFEs.CNAid_decode | Decoding table for copy number alteration cancer functional... |
| CELLector.CFEs.CNAid_mapping | Pan-Cancer/Cancer-Specific RACSs map. |
| CELLector.CFEs.HMSid_decode | Decoding table for hypermethylated gene promoter cancer... |
| CELLector.CFEsV2 | Cancer Functional Events (version 2) |
| CELLector.changeSScolors | Changing CELLector searching space color scheme |
| CELLector.CMPs_getDriverGenes | List of high-confidence cancer driver genes from the Cell... |
| CELLector.CMPs_getModelAnnotation | In-vitro models' annotation from the Cell Model Passports |
| CELLector.CMPs_getVariants | Somatic variants of in-visto models from the Cell Model... |
| CELLector.cna_look_up | Decoding identifers of chromosomal regions of recurrent Copy... |
| CELLector.createAllSignatures | Derive signatures underlying the cancer patients' subtypes in... |
| CELLector.createAllSignatures_Partitioned | Extract signatures underlying the cancer patients' subtypes... |
| CELLector.from_Hierarchical_to_Partition | Convert CELLector output to partioned format |
| CELLector.HCCancerDrivers | High Confidence Cancer Driver genes |
| CELLector.hms_look_up | Decoding identifers of hypermethylated gene promoters |
| CELLector.makeSelection | Genomics guided selection of Cancer Cell lines |
| CELLector.mostSupported_CFEs | Most recurrent combinations of Cancer Functional Events |
| CELLector.MSIstatus | Cell lines' Microsatellite status |
| CELLector.Pathway_CFEs | Cancer functional events in biological pathways |
| CELLector.PrimTum.BEMs | Primary Tumours' Binary Genomic Event Matrices |
| CELLector.PrimTum.BEMs_v2 | Primary Tumours' Binary Genomic/Epigenomic Event Matrices |
| CELLector.PrimTumVarCatalog | Built-in Primary Tumour variants' catalogue |
| CELLector.RecfiltVariants | Somatic mutations recurrently observed in cancer |
| CELLector.Score | Cell line quality score |
| CELLector.selectionVisit | Visiting the CELLector searching space |
| CELLector.solveFormula | Identify cell lines harbouring a signature of Cancer... |
| CELLector.Summary_Projection | Summary of cell lines mapping on the partitioned CELLector... |
| CELLector.Tumours_buildBEM | Building a Genomic Binary Event Matrix (BEM) for primary... |
| CELLector.unicizeSamples | Unicize patient samples' identifiers |
| CELLector.visualiseSearchingSpace | Visualising the CELLector searching space as a collapsibe... |
| CELLector.visualiseSearchingSpace_sunBurst | Visualising the CELLector searching space as a sunburst |
