CELLector.CMPs_getVariants: Somatic variants of in-visto models from the Cell Model...
In najha/CELLector: Genomics guided selection of cancer cell lines
CELLector.CMPs_getVariants R Documentation
Somatic variants of in-visto models from the Cell Model Passports
Usage
CELLector.CMPs_getVariants
(URL = "https://cog.sanger.ac.uk/cmp/download/mutations_2018-08-01_1640.csv.gz")
Arguments
URL
The URL specifying the online location of the file containing the somatic variants. Default value points to the most up-to-date version of this file (which is keptupdated).
Value
A data frame with one entry per variant and columns specifying different annotation entries.
Author(s)
Francesco Iorio (fi9323@gmail.com)
References
van der Meer D, Barthorpe S, Yang W, et al. Cell Model Passports-a hub for clinical, genetic and functional datasets of preclinical cancer models. Nucleic Acids Res. 2019;47(D1):D923–D929. doi:10.1093/nar/gky872
Examples
CMP_variants<-CELLector.CMPs_getVariants()
head(CMP_variants)
najha/CELLector documentation built on Feb. 8, 2023, 5:35 a.m.
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| CELLector.CMPs_getVariants | R Documentation |
Somatic variants of in-visto models from the Cell Model Passports
Usage
CELLector.CMPs_getVariants (URL = "https://cog.sanger.ac.uk/cmp/download/mutations_2018-08-01_1640.csv.gz")
Arguments
URL |
The URL specifying the online location of the file containing the somatic variants. Default value points to the most up-to-date version of this file (which is keptupdated). |
Value
A data frame with one entry per variant and columns specifying different annotation entries.
Author(s)
Francesco Iorio (fi9323@gmail.com)
References
van der Meer D, Barthorpe S, Yang W, et al. Cell Model Passports-a hub for clinical, genetic and functional datasets of preclinical cancer models. Nucleic Acids Res. 2019;47(D1):D923–D929. doi:10.1093/nar/gky872
Examples
CMP_variants<-CELLector.CMPs_getVariants() head(CMP_variants)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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