CELLector.visualiseSearchingSpace_sunBurst: Visualising the CELLector searching space as a sunburst

In najha/CELLector: Genomics guided selection of cancer cell lines

Visualising the CELLector searching space as a sunburst

Description

This function visualise the CELLector searching space as an interactive sunburst.

Usage

CELLector.visualiseSearchingSpace_sunBurst(searchSpace)

Arguments

searchSpace

A CELLector searching space as returned by the CELLector.Build_Search_Space function

Author(s)

Hanna Najgebauer and Francesco Iorio

See Also

CELLector.Build_Search_Space,

Examples

data(CELLector.PrimTum.BEMs)
data(CELLector.Pathway_CFEs)
data(CELLector.CFEs.CNAid_mapping)
data(CELLector.CFEs.CNAid_decode)
data(CELLector.HCCancerDrivers)
data(CELLector.CellLine.BEMs)


tumours_BEM<-CELLector.PrimTum.BEMs$COREAD
CELLlineData<-CELLector.CellLine.BEMs$COREAD

### unicize the sample identifiers for the tumour data
tumours_BEM<-CELLector.unicizeSamples(tumours_BEM)

### building the CELLector searching space
CSS<-CELLector.Build_Search_Space(ctumours = t(tumours_BEM),
                                  verbose = FALSE,
                                  minGlobSupp = 0.05,
                                  cancerType = 'COREAD',
                                  pathway_CFEs = CELLector.Pathway_CFEs,
                                  cnaIdMap = CELLector.CFEs.CNAid_mapping,
                                  mutOnly = FALSE,
                                  cnaIdDecode = CELLector.CFEs.CNAid_decode,
                                  cdg = CELLector.HCCancerDrivers)

### visualising the Searching space as sunburst
CELLector.visualiseSearchingSpace_sunBurst(searchSpace = CSS)

najha/CELLector documentation built on Feb. 8, 2023, 5:35 a.m.