CELLector.CFEs.CNAid_mapping: Pan-Cancer/Cancer-Specific RACSs map.
In najha/CELLector: Genomics guided selection of cancer cell lines
CELLector.CFEs.CNAid_mapping R Documentation
Pan-Cancer/Cancer-Specific RACSs map.
Description
A data frame mapping chromosomal regions of recurrent copy number amplifications/deletions in cancer (RACSs, as defined in [1]) identified via ADMIRE [2] in the context of specific cancer types to PanCancer RACSs.
Usage
data("CELLector.CFEs.CNAid_mapping")
Format
A data frame with 425 observations (one for each PanCancer RACS) and a column for each of 27 different cancer types (specified by
TCGA labels). The entry in position i,j contains the identifier of the ith PanCancer RACS in the context of the jth
cancer type (where available).
Author(s)
Francesco Iorio (fi9232@gmail.com)
References
[1] Iorio, F. et al. A Landscape of Pharmacogenomic Interactions in Cancer. Cell 166, 740–754 (2016).
[2] van Dyk, E., Reinders, M. J. T. & Wessels, L. F. A. A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control. Nucleic Acids Res. 41, e100 (2013).
Examples
data(CELLector.CFEs.CNAid_mapping)
head(CELLector.CFEs.CNAid_mapping)
najha/CELLector documentation built on Feb. 8, 2023, 5:35 a.m.
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| CELLector.CFEs.CNAid_mapping | R Documentation |
Pan-Cancer/Cancer-Specific RACSs map.
Description
A data frame mapping chromosomal regions of recurrent copy number amplifications/deletions in cancer (RACSs, as defined in [1]) identified via ADMIRE [2] in the context of specific cancer types to PanCancer RACSs.
Usage
data("CELLector.CFEs.CNAid_mapping")
Format
A data frame with 425 observations (one for each PanCancer RACS) and a column for each of 27 different cancer types (specified by TCGA labels). The entry in position i,j contains the identifier of the ith PanCancer RACS in the context of the jth cancer type (where available).
Author(s)
Francesco Iorio (fi9232@gmail.com)
References
[1] Iorio, F. et al. A Landscape of Pharmacogenomic Interactions in Cancer. Cell 166, 740–754 (2016).
[2] van Dyk, E., Reinders, M. J. T. & Wessels, L. F. A. A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control. Nucleic Acids Res. 41, e100 (2013).
Examples
data(CELLector.CFEs.CNAid_mapping) head(CELLector.CFEs.CNAid_mapping)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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