CELLector.MSIstatus: Cell lines' Microsatellite status
In najha/CELLector: Genomics guided selection of cancer cell lines
CELLector.MSIstatus R Documentation
Cell lines' Microsatellite status
Description
The microsatellite status of the cell lines in the CELLector collection, which can be stable (MSI-S), lowly instable (MSI-L), or highly instable (MSI-H) from [1]
Usage
data("CELLector.MSIstatus")
Format
A named vector of string with one entry per cell lines (with COSMIC [2] identifiers as names) specigying the MSI status of each cell line as detailed in the description above.
Author(s)
Francesco Iorio (fi9232@gmail.com)
References
[1] Iorio, F. et al. A Landscape of Pharmacogenomic Interactions in Cancer. Cell 166, 740–754 (2016).
[2] Forbes, S. A. et al. COSMIC: exploring the world’s knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805–11 (2015
Examples
data(CELLector.MSIstatus)
head(CELLector.MSIstatus)
najha/CELLector documentation built on Feb. 8, 2023, 5:35 a.m.
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| CELLector.MSIstatus | R Documentation |
Cell lines' Microsatellite status
Description
The microsatellite status of the cell lines in the CELLector collection, which can be stable (MSI-S), lowly instable (MSI-L), or highly instable (MSI-H) from [1]
Usage
data("CELLector.MSIstatus")
Format
A named vector of string with one entry per cell lines (with COSMIC [2] identifiers as names) specigying the MSI status of each cell line as detailed in the description above.
Author(s)
Francesco Iorio (fi9232@gmail.com)
References
[1] Iorio, F. et al. A Landscape of Pharmacogenomic Interactions in Cancer. Cell 166, 740–754 (2016).
[2] Forbes, S. A. et al. COSMIC: exploring the world’s knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805–11 (2015
Examples
data(CELLector.MSIstatus) head(CELLector.MSIstatus)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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