CELLector.from_Hierarchical_to_Partition: Convert CELLector output to partioned format

In najha/CELLector: Genomics guided selection of cancer cell lines

Convert CELLector output to partioned format

Description

This function goes through binary tree output of CELLector search space in the form of navigable table [1] and convert hierachical configuration to partitioned.

Usage

CELLector.from_Hierarchical_to_Partition(navTable,
                                         samples_id,
                                         verbose=TRUE)

Arguments

navTable	navTable entry of output from CELLector.Build_Search_Space
samples_id	Sample names of the cancer patient cohort as input of CELLector.Build_Search_Space, i.e. rownames(ctumours)
verbose	A boolean argument specifying whether step-by-step information on the algorithm progression should be displayed run-time

Details

This is an auxiliary function used in CELLector.Build_Search_Space_Partitioned (for details check documentation).

Value

Navigable table: a data frame with a row for each patient group and columns as described in CELLector.Build_Search_Space_Partitioned

Author(s)

Lucia Trastulla and Francesco Iorio

References

[1] Najgebauer, H. et al. Genomics Guided Selection of Cancer in vitro Models.

https://doi.org/10.1016/j.cels.2020.04.007

See Also

CELLector.Build_Search_Space CELLector.Build_Search_Space_Partitioned

Examples

# see example for CELLector.Build_Search_Space_Partitioned

najha/CELLector documentation built on Feb. 8, 2023, 5:35 a.m.