FindConnectionsForAllHopCounts: For all hop counts up to the maximum, find subnetworks...

In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks

For all hop counts up to the maximum, find subnetworks connecting each pair of genes by exactly that number of hops. For instance, find each

Description

For all hop counts up to the maximum, find subnetworks connecting each pair of genes by exactly that number of hops. For instance, find each

Usage

FindConnectionsForAllHopCounts(subnetworks, verbose = FALSE)

Arguments

subnetworks	A list of bipartite (PANDA-like) subnetworks for each gene, containing only the significant edges meeting the hop count criteria and where each network is a data frame with the following format: tf,gene
verbose	Whether or not to print detailed information about the run.

Value

A bipartite subnetwork in the same format as the original networks.

netZoo/netZooR documentation built on July 28, 2024, 6 p.m.