mut.ucec: Example of mutation data

In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks

Example of mutation data

Description

Somatic mutations of Uterine Corpus Endometrial Carcinoma from The Cancer Genome Atlas. Data were downloaded and pre-processed as described in Kuijjer et al.

This data is a toy example data for SAMBAR, it contains gene annotations

Usage

data(mut.ucec)

data(mut.ucec)

Format

A table with 248 rows and 19754 columns

A binary dataframe where 1 indicates a mutation and 0 otherwise.

Value

A table of 19754 genes by 248 samples

References

Kuijjer, Marieke Lydia, et al. "Cancer subtype identification using somatic mutation data." British journal of cancer 118.11 (2018): 1492-1501.

netZoo/netZooR documentation built on Oct. 16, 2024, 10:23 p.m.