sambarConvertgmt: Convert .gmt files into a binary matrix.
In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks
sambarConvertgmt R Documentation
Convert .gmt files into a binary matrix.
Description
Convert .gmt files into a binary matrix.
Usage
sambarConvertgmt(signature, cagenes)
Arguments
signature
A file containing gene sets (signatures) in .gmt format. These gene sets will be used to de-sparsify the gene-level mutation scores.
cagenes
A vector of genes, for example of cancer-associated genes. This will be used to subset the gene-level mutation data to.
Value
A matrix containing gene set mutation scores.
netZoo/netZooR documentation built on Oct. 16, 2024, 10:23 p.m.
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| sambarConvertgmt | R Documentation |
Convert .gmt files into a binary matrix.
Description
Convert .gmt files into a binary matrix.
Usage
sambarConvertgmt(signature, cagenes)
Arguments
signature |
A file containing gene sets (signatures) in .gmt format. These gene sets will be used to de-sparsify the gene-level mutation scores. |
cagenes |
A vector of genes, for example of cancer-associated genes. This will be used to subset the gene-level mutation data to. |
Value
A matrix containing gene set mutation scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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