sambarDesparsify: De-sparsify gene-level mutation scores into gene set-level...

In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks

De-sparsify gene-level mutation scores into gene set-level mutation scores.

Description

De-sparsify gene-level mutation scores into gene set-level mutation scores.

Usage

sambarDesparsify(edgx, mutratecorx)

Arguments

edgx	A binary matrix containing information on which genes belong to which gene sets. Output from the sambarConvertgmt function.
mutratecorx	Gene-level mutation scores corrected for the number of gene sets each gene belongs to (from sambar function).

Value

De-sparsified mutation data.

netZoo/netZooR documentation built on June 8, 2024, 6:20 a.m.