API for neurogenomics/orthogene
Interspecies gene mapping
| Global functions | |
|---|---|
| add_columns | Source code |
| add_rowcol_names | Source code |
| add_synonyms | Man page Source code |
| aggregate_mapped_genes | Man page Source code |
| aggregate_rows | Man page Source code |
| aggregate_rows_monocle3 | Man page Source code |
| aggregate_rows_stats | Source code |
| all_genes | Man page Source code |
| all_genes_babelgene | Man page Source code |
| all_genes_gprofiler | Source code |
| all_genes_homologene | Source code |
| all_ranges | Source code |
| all_species | Man page Source code |
| as_delayed_array | Source code |
| as_dict | Source code |
| as_table | Source code |
| check_agg_args | Source code |
| check_agg_opts | Source code |
| check_gene_df_type | Man page Source code |
| check_gene_map | Source code |
| check_gene_output | Source code |
| check_keep_popular | Source code |
| check_matrix | Source code |
| check_rownames_args | Source code |
| check_sparseMatrix | Source code |
| check_species_babelgene | Source code |
| common_species_names_dict | Source code |
| convert_orthologs | Man page Source code |
| create_background | Man page Source code |
| dMcast | Man page Source code |
| drop_non121 | Source code |
| drop_nonorth_genes | Source code |
| earthworm2human_map | Man page Source code |
| exp_mouse | Man page |
| exp_mouse_enst | Man page |
| extract_gene_list | Source code |
| filter_gene_df | Source code |
| find_all_nas | Source code |
| format_gene_df | Source code |
| format_species | Man page Source code |
| gconvert_target_opts | Source code |
| gene_input_opts | Source code |
| gene_output_opts | Source code |
| get_all_orgs | Source code |
| get_data_check | Source code |
| get_orgdb_genomeinfodbdata | Man page Source code |
| get_orgdb_gprofiler | Source code |
| get_silhouettes | Man page Source code |
| ggtree_plot | Man page Source code |
| gprofiler_namespace | Man page |
| gprofiler_orgs | Man page |
| infer_species | Man page Source code |
| infer_species_plot | Man page Source code |
| invert_dictionary | Man page Source code |
| is_converted | Source code |
| is_delayed_array | Source code |
| is_human | Source code |
| is_matrix | Source code |
| is_sparse_matrix | Source code |
| load_data | Source code |
| load_rda | Source code |
| load_rds | Source code |
| many2many_rows | Man page Source code |
| map_genes | Man page Source code |
| map_genes_planosphere | Man page Source code |
| map_orthologs | Man page Source code |
| map_orthologs_babelgene | Man page Source code |
| map_orthologs_custom | Man page Source code |
| map_orthologs_gprofiler | Man page Source code |
| map_orthologs_homologene | Man page Source code |
| map_species | Man page Source code |
| map_species_check_args | Source code |
| message_parallel | Man page Source code |
| messager | Source code |
| method_fill_colors | Source code |
| methods_opts | Source code |
| non121_strategy_opts | Source code |
| orthogene | Man page |
| orthogene-package | Man page |
| plot_benchmark_bar | Man page Source code |
| plot_benchmark_scatter | Man page Source code |
| plot_orthotree | Man page Source code |
| plot_orthotree_metadata | Source code |
| prepare_clades | Source code |
| prepare_tree | Man page Source code |
| remove_all_nas | Source code |
| remove_image_bg | Man page Source code |
| report_gene_map | Source code |
| report_orthologs | Man page Source code |
| report_orthologs_i | Source code |
| rotate_clades | Source code |
| run_benchmark | Man page Source code |
| run_benchmark_once | Source code |
| set_gprofiler | Man page Source code |
| sort_rows_func | Source code |
| sparsity | Source code |
| taxa_id_dict | Man page Source code |
| to_sparse | Source code |
| use_cache | Source code |
