gprofiler_orgs: Reference organisms

In neurogenomics/orthogene: Interspecies gene mapping

Reference organisms

Description

Organism for which gene references are available via gProfiler API. Used as a backup if API is not available.

Format

data.frame

Source

gProfiler site

# NOTE!: Must run usethis::use_data for all internal data at once. # otherwise, the prior internal data will be overwritten. #### Internal data 1: gprofiler_namespace #### #### Manually-prepared CSV #### path <- "inst/extdata/gprofiler_namespace.csv.gz" gprofiler_namespace <- data.table::fread(path) #### Internal data 2: gprofiler_orgs gprofiler_orgs <- orthogene:::get_orgdb_gprofiler(use_local=FALSE) #### Save #### usethis::use_data(gprofiler_orgs,gprofiler_namespace, overwrite = TRUE, internal=TRUE)

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.