earthworm2human_map: Earthworm to human map

In neurogenomics/orthogene: Interspecies gene mapping

Earthworm to human map

Description

Orthologous gene mapping between earthworm (Eisenia andrei) and human (Homo sapiens) genes.

Usage

earthworm2human_map(
  evalue_threshold = NULL,
  save_dir = tools::R_user_dir("orthogene", which = "cache")
)

Arguments

evalue_threshold	Only include mappings with an E-value below a set threshold. See here for further guidance.
save_dir	Directory to save mapping file to.

Details

These mappings were generated using BLAST (a protein sequence tool) implemented within SAMap. This mapping data was provided upon request by the authors of Wang et al. 2022. Column names were collected from Metagenomics Wiki.

Value

data.table containing earthworm-to-human gene orthologs.

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.