all_species: All species

In neurogenomics/orthogene: Interspecies gene mapping

All species

Description

List all species currently supported by orthogene. Wrapper function for map_species. When method=NULL, all species from all available methods will be returned.

Usage

all_species(method = NULL, verbose = TRUE)

Arguments

method	R package to use for gene mapping: "gprofiler" : Slower but more species and genes. "homologene" : Faster but fewer species and genes. "babelgene" : Faster but fewer species and genes. Also gives consensus scores for each gene mapping based on a several different data sources.
verbose	Print messages.

Value

data.table of species names, provided in multiple formats.

Examples

species_dt <- all_species()

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.