exp_mouse_enst: Transcript expression data: mouse

In neurogenomics/orthogene: Interspecies gene mapping

Transcript expression data: mouse

Description

Mean pseudobulk single-cell RNA-seq Transcript expression matrix.

Data originally comes from Zeisel et al., 2018 (Cell).

Usage

data("exp_mouse_enst")

Format

sparse matrix

Source

Publication data("exp_mouse") mapped_genes <- map_genes(genes = rownames(exp_mouse)[seq(1,100)], target = "ENST", species = "mouse", drop_na = FALSE) exp_mouse_enst <- exp_mouse[mapped_genes$input,] rownames(exp_mouse_enst) <- mapped_genes$target all_nas <- orthogene:::find_all_nas(rownames(exp_mouse_enst)) exp_mouse_enst <- exp_mouse_enst[!all_nas,] exp_mouse_enst <- phenomix::add_noise(exp_mouse_enst) usethis::use_data(exp_mouse_enst, overwrite = TRUE)

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.