map_genes_planosphere: Map genes: SMED

In neurogenomics/orthogene: Interspecies gene mapping

Map genes: SMED

Description

Map planarian (Schmmidt mediterrani) genes to/from the SMED format using data from the planosphere database.

Usage

map_genes_planosphere(
  genes,
  output_format = "SMESG_dd_Smes_v2",
  drop_duplicates = TRUE,
  save_dir = tools::R_user_dir("orthogene", which = "cache"),
  verbose = TRUE
)

Arguments

genes	Gene list.
drop_duplicates	Only output one row per input gene.
verbose	Print messages.

Value

data.table

Source

genes <- c("dd_Smed_v6_10690_0","dd_Smed_v6_10691_0","dd_Smed_v6_10693_0") gene_map <- map_genes_planosphere(genes=genes)

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.