ggtree_plot: Plot a phylogenetic tree
In neurogenomics/orthogene: Interspecies gene mapping

ggtree_plot

R Documentation

Plot a phylogenetic tree

Plot a phylogenetic tree with ggtree and metadata from report_orthologs.

ggtree_plot(
  tr,
  d,
  scaling_factor = 1,
  clades = NULL,
  clades_palette = NULL,
  reference_species = NULL,
  verbose = TRUE
)

`tr`	Tree.
`d`	Metadata
`scaling_factor`	How much to scale y-axis parameters (e.g. offset) by.
`clades`	Clades metadata.
`clades_palette`	Palette to color highlighted `clades` with.
`verbose`	Print messages.

ggplot object.

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.

neurogenomics/orthogene index

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