all_genes_babelgene: Get all genes: babelgene

In neurogenomics/orthogene: Interspecies gene mapping

Get all genes: babelgene

Description

Get all genes for a given species using the method "babelgene".

Usage

all_genes_babelgene(
  species,
  run_map_species = TRUE,
  save_dir = tools::R_user_dir("orthogene", which = "cache"),
  use_old = FALSE,
  min_support = 1,
  verbose = TRUE
)

Arguments

species	Species to get all genes for. Will first be standardised with map_species.
run_map_species	Standardise species names with map_species first (Default: TRUE).
save_dir	Directory to save babelgene mapping files to.
use_old	Use an old version of babelgene::orthologs_df (stored on GitHub Releases) for consistency.
verbose	Print messages.

Value

All genes.

Source

babelgene::orthologs_df version differences

neurogenomics/orthogene documentation built on Jan. 30, 2024, 4:44 a.m.