ms_to_eSet: ms_to_eSet

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Function to reformat dataframe or matrix data into an expressionset (eSet) format

Usage

ms_to_eSet(
  data,
  matrixonly = FALSE,
  proteininfo = NULL,
  nread = NULL,
  pdata = NULL,
  refeset = NULL,
  logtransform = FALSE
)

Arguments

data	dataset to transform into an expressionset (eSet) format
matrixonly	whether the input dataset is a matrix format, default set to FALSE
proteininfo	a dataframe containing the correponding protein id- protein description information, which is only required when the input data is a matrix
nread	number of columns with protein abundance information
pdata	a dataframe containing the experimental phenotype data information
refeset	a reference eset
logtransform	whether the numeric data input should be log2 transformed

Value

a dataframe

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.