| .calculateTypeFDRRate |
Source code
|
| .decimalFormat |
Source code
|
| .formatDecimal |
Source code
|
| .getClusterFeatureMatrix |
Source code
|
| .getClusterMedians |
Source code
|
| .getDisplayNames |
Source code
|
| .graphColorPalette |
Source code
|
| .logOff |
Source code
|
| .logOn |
Source code
|
| .scaleToOne |
Source code
|
| Citrus |
Man page
|
| Citrus-package |
Man page
|
| calculatePredictionErrorRate |
Source code
|
| citrus.assignToCluster |
Source code
|
| citrus.buildEndpointModel |
Man page
Source code
|
| citrus.buildFoldEndpointModel |
Source code
|
| citrus.buildFoldsEndpointModels |
Man page
Source code
|
| citrus.buildModel.classification |
Man page
Source code
|
| citrus.buildModel.continuous |
Man page
Source code
|
| citrus.buildModel.survival |
Source code
|
| citrus.calculateClusteringMembership.hierarchical |
Source code
|
| citrus.calculateFeature.abundances |
Man page
Source code
|
| citrus.calculateFeature.medians |
Man page
Source code
|
| citrus.calculateFeature.type |
Man page
|
| citrus.calculateFeatures |
Man page
Source code
|
| citrus.calculateFileClusterAbundance |
Source code
|
| citrus.calculateFileClusterMedian |
Source code
|
| citrus.calculateFoldFeatureSet |
Man page
Source code
|
| citrus.calculateFoldFeatures |
Source code
|
| citrus.calculateModelPartialLikelihood |
Source code
|
| citrus.checkFileParameterConsistency |
Man page
Source code
|
| citrus.checkFileParameterConsistencyUI |
Man page
Source code
|
| citrus.cluster |
Man page
Source code
|
| citrus.cluster.hierarchical |
Source code
|
| citrus.clusterAndMapFolds |
Man page
Source code
|
| citrus.clusterFold |
Source code
|
| citrus.convertConditionMatrix |
Source code
|
| citrus.createHierarchyGraph |
Man page
Source code
|
| citrus.cvIteration.survival |
Source code
|
| citrus.endpointRegress |
Man page
Source code
|
| citrus.exportCluster |
Man page
Source code
|
| citrus.exportClusterUI |
Man page
Source code
|
| citrus.extractModelFeatures |
Man page
Source code
|
| citrus.familyList |
Man page
Source code
|
| citrus.featureTypes |
Man page
Source code
|
| citrus.fileEventCount |
Man page
Source code
|
| citrus.full |
Man page
Source code
|
| citrus.generateRegularizationThresholds |
Man page
Source code
|
| citrus.generateRegularizationThresholds.classification |
Man page
Source code
|
| citrus.generateRegularizationThresholds.continuous |
Man page
Source code
|
| citrus.generateRegularizationThresholds.survival |
Source code
|
| citrus.getCVMinima |
Man page
Source code
|
| citrus.getClusterAncestors |
Man page
Source code
|
| citrus.getClusterDecendants |
Man page
Source code
|
| citrus.getFileParameters |
Source code
|
| citrus.getRelatedClusterIds |
Man page
|
| citrus.launchUI |
Man page
Source code
|
| citrus.mapFoldDataToClusterSpace |
Source code
|
| citrus.mapNeighborsToCluster |
Source code
|
| citrus.mapToClusterSpace |
Man page
Source code
|
| citrus.maskCombinedFCSSet |
Man page
Source code
|
| citrus.modelTypes |
Man page
Source code
|
| citrus.overlapDensityPlot |
Source code
|
| citrus.plotClusteringHierarchy |
Man page
Source code
|
| citrus.plotClusters |
Man page
Source code
|
| citrus.plotHierarchicalClusterFeatureGroups |
Man page
Source code
|
| citrus.plotModelClusters |
Source code
|
| citrus.plotModelDifferentialFeatures.classification |
Source code
|
| citrus.plotModelDifferentialFeatures.continuous |
Source code
|
| citrus.plotTypeErrorRate |
Source code
|
| citrus.predict |
Man page
Source code
|
| citrus.predict.classification |
Man page
Source code
|
| citrus.predict.continuous |
Man page
Source code
|
| citrus.predict.survival |
Source code
|
| citrus.readFCS |
Man page
Source code
|
| citrus.readFCSSet |
Man page
Source code
|
| citrus.selectClusters |
Man page
Source code
|
| citrus.selectClusters.minimumClusterSize |
Man page
Source code
|
| citrus.thresholdCVs |
Man page
Source code
|
| citrus.thresholdCVs.quick |
Man page
Source code
|
| citrus.thresholdCVs.quick.classification |
Man page
Source code
|
| citrus.thresholdCVs.quick.continuous |
Man page
Source code
|
| citrus.thresholdCVs.survival |
Source code
|
| citrus.traverseMergeOrder |
Source code
|
| citrus.version |
Man page
Source code
|
| foldPredict.classification |
Source code
|
| foldPredict.continuous |
Source code
|
| foldScore.classification |
Source code
|
| foldScore.continuous |
Source code
|
| plot.citrus.full.result |
Man page
Source code
|
| plot.citrus.regressionResult |
Man page
Source code
|
| print.citrus.clustering |
Man page
Source code
|
| print.citrus.combinedFCSSet |
Man page
Source code
|
| print.citrus.endpointModel |
Man page
Source code
|
| print.citrus.foldClustering |
Man page
Source code
|
| print.citrus.full.result |
Man page
Source code
|
| subsetByFile |
Source code
|
