Man pages for nolanlab/citrus
Citrus: Identification of stratifying subpopulations in Flow Cytometry Data.

CitrusCitrus: Identification of stratifying subpopulations in Flow...
citrus.buildEndpointModelBuild an endpoint model
citrus.buildFoldsEndpointModelsBuild models from each fold of clustering
citrus.calculateFeaturesCalculate descriptive cluster features
citrus.calculateFeature.typeCalculate descriptive cluster features
citrus.calculateFoldFeatureSetBuild cluster features for folds of clustering
citrus.checkFileParameterConsistencyChecks consistency of FCS File parameters.
citrus.checkFileParameterConsistencyUIGraphical Interface to checking file parameter consistency.
citrus.clusterCluster a 'citrus.combinedFCSSet'
citrus.clusterAndMapFoldsCluster independent folds of data
citrus.createHierarchyGraphCreate a graph object from clustering hierarchy
citrus.endpointRegressRegress against an experimental endpoint
citrus.exportClusterExports cluster events to file
citrus.exportClusterUIUI for exporting file cluster events
citrus.extractModelFeaturesReport model features at pre-specified thresholds.
citrus.familyListList possible model families
citrus.featureTypesList of computable feature types
citrus.fileEventCountCounts FCS File events
citrus.fullPerform a full Citrus analysis
citrus.generateRegularizationThresholdsGenerate model regularization thresholds
citrus.getCVMinimaGet regularization thresholds of pre-selected...
citrus.getRelatedClusterIdsGet ancestors or decendants of a cluster
citrus.launchUILaunch web-based interface for configuring and running citrus
citrus.mapToClusterSpaceMap new data to existing clusters
citrus.maskCombinedFCSSetMasks a citrus.combinedFCSSet
citrus.modelTypesList possible model types
citrus.plotClusteringHierarchyPlot clustering hierarchy
citrus.plotClustersPlot cluster histograms
citrus.plotHierarchicalClusterFeatureGroupsPlot clustering hierarchy with clusters highlighted
citrus.predictPredict labels of new feature set
citrus.readFCSRead an FCS file
citrus.readFCSSetRead a set of FCS files for analysis
citrus.selectClustersSelect clusters for further analysis
citrus.selectClusters.minimumClusterSizeSelects clusters for endpoint analysis
citrus.thresholdCVsCalculate model error rates
citrus.versionGet Citrus package version
plot.citrus.full.resultPlot a citrus.full.result
plot.citrus.regressionResultPlot results of a Citrus regression analysis
nolanlab/citrus documentation built on May 23, 2017, 4:45 p.m.