citrus.maskCombinedFCSSet: Masks a citrus.combinedFCSSet

In nolanlab/citrus: Citrus: Identification of stratifying subpopulations in Flow Cytometry Data.

Masks a citrus.combinedFCSSet

Description

Masks a citrus.combinedFCSset to include data from a subset of file ids.

Usage

citrus.maskCombinedFCSSet(citrus.combinedFCSSet, fileIds)

Arguments

citrus.combinedFCSSet	A citrus.combinedFCSSet object.
fileIds	Vector of file IDs for which to retain data.

Value

A citrus.combinedFCSSet object.

Author(s)

Robert Bruggner

See Also

citrus.readFCSSet

Examples

# Where the data lives
dataDirectory = file.path(system.file(package = "citrus"),"extdata","example1")

# Create list of files to be analyzed
fileList = data.frame("unstim"=list.files(dataDirectory,pattern=".fcs"))

# Read citrus.combinedFCSSet
citrus.combinedFCSSet = citrus.readFCSSet(dataDirectory,fileList)

# Mask
maskedFCSSet = citrus.maskCombinedFCSSet(citrus.combinedFCSSet,fileIds=1:3)

# Check - should be 1,2,3
unique(maskedFCSSet$data[,"fileId"])

nolanlab/citrus documentation built on April 19, 2024, 6:49 p.m.