citrus.exportCluster | R Documentation |
Exports cluster events from each file
citrus.exportCluster(clusterId, citrus.clustering, citrus.combinedFCSSet,
outputDirectory, conditions = NULL)
clusterId |
ID of cluster to be exported |
citrus.clustering |
|
citrus.combinedFCSSet |
|
outputDirectory |
Where cluster data should be exported to. |
conditions |
If not |
Robert Bruggner
# Where the data lives
dataDirectory = file.path(system.file(package = "citrus"),"extdata","example1")
# Create list of files to be analyzed
fileList = data.frame("unstim"=list.files(dataDirectory,pattern=".fcs"))
# Read the data
citrus.combinedFCSSet = citrus.readFCSSet(dataDirectory,fileList)
# List of columns to be used for clustering
clusteringColumns = c("Red","Blue")
# Cluster data
citrus.clustering = citrus.cluster(citrus.combinedFCSSet,clusteringColumns)
# Export Cluster
# citrus.exportCluster(clusterId=19500,citrus.clustering,citrus.combinedFCSSset,outputDirectory="/PATH/TO/DIRECTORY/")
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