API for nolanlab/citrus
Citrus: Identification of stratifying subpopulations in Flow Cytometry Data.

Global functions
Citrus Man page
Citrus-package Man page
calculatePredictionErrorRate Source code
calculateTypeFDRRate Source code
citrus.assignToCluster Source code
citrus.buildEndpointModel Man page Source code
citrus.buildFoldEndpointModel Source code
citrus.buildFoldsEndpointModels Man page Source code
citrus.buildModel.classification Man page Source code
citrus.buildModel.continuous Man page Source code
citrus.buildModel.survival Source code
citrus.calculateClusteringMembership.hierarchical Source code
citrus.calculateFeature.abundances Man page Source code
citrus.calculateFeature.medians Man page Source code
citrus.calculateFeature.type Man page
citrus.calculateFeatures Man page Source code
citrus.calculateFileClusterAbundance Source code
citrus.calculateFileClusterMedian Source code
citrus.calculateFoldFeatureSet Man page Source code
citrus.calculateFoldFeatures Source code
citrus.calculateModelPartialLikelihood Source code
citrus.checkFileParameterConsistency Man page Source code
citrus.checkFileParameterConsistencyUI Man page Source code
citrus.cluster Man page Source code
citrus.cluster.hierarchical Source code
citrus.clusterAndMapFolds Man page Source code
citrus.clusterFold Source code
citrus.convertConditionMatrix Source code
citrus.createHierarchyGraph Man page Source code
citrus.cvIteration.survival Source code
citrus.endpointRegress Man page Source code
citrus.exportCluster Man page Source code
citrus.exportClusterUI Man page Source code
citrus.extractModelFeatures Man page Source code
citrus.familyList Man page Source code
citrus.featureTypes Man page Source code
citrus.fileEventCount Man page Source code
citrus.full Man page Source code
citrus.generateRegularizationThresholds Man page Source code
citrus.generateRegularizationThresholds.classification Man page Source code
citrus.generateRegularizationThresholds.continuous Man page Source code
citrus.generateRegularizationThresholds.survival Source code
citrus.getCVMinima Man page Source code
citrus.getClusterAncestors Man page Source code
citrus.getClusterDecendants Man page Source code
citrus.getFileParameters Source code
citrus.getRelatedClusterIds Man page
citrus.launchUI Man page Source code
citrus.mapFoldDataToClusterSpace Source code
citrus.mapNeighborsToCluster Source code
citrus.mapToClusterSpace Man page Source code
citrus.maskCombinedFCSSet Man page Source code
citrus.modelTypes Man page Source code
citrus.overlapDensityPlot Source code
citrus.plotClusteringHierarchy Man page Source code
citrus.plotClusters Man page Source code
citrus.plotHierarchicalClusterFeatureGroups Man page Source code
citrus.plotModelClusters Source code
citrus.plotModelDifferentialFeatures.classification Source code
citrus.plotModelDifferentialFeatures.continuous Source code
citrus.plotTypeErrorRate Source code
citrus.predict Man page Source code
citrus.predict.classification Man page Source code
citrus.predict.continuous Man page Source code
citrus.predict.survival Source code
citrus.readFCS Man page Source code
citrus.readFCSSet Man page Source code
citrus.selectClusters Man page Source code
citrus.selectClusters.minimumClusterSize Man page Source code
citrus.thresholdCVs Man page Source code
citrus.thresholdCVs.quick Man page Source code
citrus.thresholdCVs.quick.classification Man page Source code
citrus.thresholdCVs.quick.continuous Man page Source code
citrus.thresholdCVs.survival Source code
citrus.traverseMergeOrder Source code
citrus.version Man page Source code
decimalFormat Source code
foldPredict.classification Source code
foldPredict.continuous Source code
foldScore.classification Source code
foldScore.continuous Source code
formatDecimal Source code
getClusterFeatureMatrix Source code
getClusterMedians Source code
getDisplayNames Source code
graphColorPalette Source code
logOff Source code
logOn Source code
pamr.fdr.new Source code
plot.citrus.full.result Man page Source code
plot.citrus.regressionResult Man page Source code
print.citrus.clustering Man page Source code
print.citrus.combinedFCSSet Man page Source code
print.citrus.endpointModel Man page Source code
print.citrus.foldClustering Man page Source code
print.citrus.full.result Man page Source code
scaleToOne Source code
subsetByFile Source code
nolanlab/citrus documentation built on May 23, 2017, 4:45 p.m.