citrus.calculateFeature.type: Calculate descriptive cluster features

In nolanlab/citrus: Citrus: Identification of stratifying subpopulations in Flow Cytometry Data.

Calculate descriptive cluster features

Description

Calculate descriptive cluster features.

Usage

citrus.calculateFeature.abundances(clusterIds, clusterAssignments,
  citrus.combinedFCSSet, fileIds = NULL, ...)

citrus.calculateFeature.medians(clusterIds, clusterAssignments,
  citrus.combinedFCSSet, medianColumns, fileIds = NULL, ...)

Arguments

clusterIds	Cluster IDs that descriptive features should be calculated for.
clusterAssignments	List with indicies of cells belonging to each cluster.
citrus.combinedFCSSet	A citrus.combinedFCSSet object.
fileIds	Vector of file IDs to calculate features for. If NULL, calculates features for all samples in citrus.combinedFCSSet.
...	Other arguments (ignored).
medianColumns	Vector of parameter names or numeric indicies of parameters for which to calculate cluster median values for.

Details

See citrus.calculateFeatures for examples.

Author(s)

Robert Bruggner

See Also

citrus.calculateFeatures, citrus.calculateFoldFeatureSet

nolanlab/citrus documentation built on April 19, 2024, 6:49 p.m.