Man pages for nolanlab/citrus
Citrus: Identification of stratifying subpopulations in Flow Cytometry Data.
| Citrus | Citrus: Identification of stratifying subpopulations in Flow... |
| citrus.buildEndpointModel | Build an endpoint model |
| citrus.buildFoldsEndpointModels | Build models from each fold of clustering |
| citrus.calculateFeatures | Calculate descriptive cluster features |
| citrus.calculateFeature.type | Calculate descriptive cluster features |
| citrus.calculateFoldFeatureSet | Build cluster features for folds of clustering |
| citrus.checkFileParameterConsistency | Checks consistency of FCS File parameters. |
| citrus.checkFileParameterConsistencyUI | Graphical Interface to checking file parameter consistency. |
| citrus.cluster | Cluster a 'citrus.combinedFCSSet' |
| citrus.clusterAndMapFolds | Cluster independent folds of data |
| citrus.createHierarchyGraph | Create a graph object from clustering hierarchy |
| citrus.endpointRegress | Regress against an experimental endpoint |
| citrus.exportCluster | Exports cluster events to file |
| citrus.exportClusterUI | UI for exporting file cluster events |
| citrus.extractModelFeatures | Report model features at pre-specified thresholds. |
| citrus.familyList | List possible model families |
| citrus.featureTypes | List of computable feature types |
| citrus.fileEventCount | Counts FCS File events |
| citrus.full | Perform a full Citrus analysis |
| citrus.generateRegularizationThresholds | Generate model regularization thresholds |
| citrus.getCVMinima | Get regularization thresholds of pre-selected... |
| citrus.getRelatedClusterIds | Get ancestors or decendants of a cluster |
| citrus.launchUI | Launch web-based interface for configuring and running citrus |
| citrus.mapToClusterSpace | Map new data to existing clusters |
| citrus.maskCombinedFCSSet | Masks a citrus.combinedFCSSet |
| citrus.modelTypes | List possible model types |
| citrus.plotClusteringHierarchy | Plot clustering hierarchy |
| citrus.plotClusters | Plot cluster histograms |
| citrus.plotHierarchicalClusterFeatureGroups | Plot clustering hierarchy with clusters highlighted |
| citrus.predict | Predict labels of new feature set |
| citrus.readFCS | Read an FCS file |
| citrus.readFCSSet | Read a set of FCS files for analysis |
| citrus.selectClusters | Select clusters for further analysis |
| citrus.selectClusters.minimumClusterSize | Selects clusters for endpoint analysis |
| citrus.thresholdCVs | Calculate model error rates |
| citrus.version | Get Citrus package version |
| plot.citrus.full.result | Plot a citrus.full.result |
| plot.citrus.regressionResult | Plot results of a Citrus regression analysis |
