Citrus | Citrus: Identification of stratifying subpopulations in Flow... |
citrus.buildEndpointModel | Build an endpoint model |
citrus.buildFoldsEndpointModels | Build models from each fold of clustering |
citrus.calculateFeatures | Calculate descriptive cluster features |
citrus.calculateFeature.type | Calculate descriptive cluster features |
citrus.calculateFoldFeatureSet | Build cluster features for folds of clustering |
citrus.checkFileParameterConsistency | Checks consistency of FCS File parameters. |
citrus.checkFileParameterConsistencyUI | Graphical Interface to checking file parameter consistency. |
citrus.cluster | Cluster a 'citrus.combinedFCSSet' |
citrus.clusterAndMapFolds | Cluster independent folds of data |
citrus.createHierarchyGraph | Create a graph object from clustering hierarchy |
citrus.endpointRegress | Regress against an experimental endpoint |
citrus.exportCluster | Exports cluster events to file |
citrus.exportClusterUI | UI for exporting file cluster events |
citrus.extractModelFeatures | Report model features at pre-specified thresholds. |
citrus.familyList | List possible model families |
citrus.featureTypes | List of computable feature types |
citrus.fileEventCount | Counts FCS File events |
citrus.full | Perform a full Citrus analysis |
citrus.generateRegularizationThresholds | Generate model regularization thresholds |
citrus.getCVMinima | Get regularization thresholds of pre-selected... |
citrus.getRelatedClusterIds | Get ancestors or decendants of a cluster |
citrus.launchUI | Launch web-based interface for configuring and running citrus |
citrus.mapToClusterSpace | Map new data to existing clusters |
citrus.maskCombinedFCSSet | Masks a citrus.combinedFCSSet |
citrus.modelTypes | List possible model types |
citrus.plotClusteringHierarchy | Plot clustering hierarchy |
citrus.plotClusters | Plot cluster histograms |
citrus.plotHierarchicalClusterFeatureGroups | Plot clustering hierarchy with clusters highlighted |
citrus.predict | Predict labels of new feature set |
citrus.readFCS | Read an FCS file |
citrus.readFCSSet | Read a set of FCS files for analysis |
citrus.selectClusters | Select clusters for further analysis |
citrus.selectClusters.minimumClusterSize | Selects clusters for endpoint analysis |
citrus.thresholdCVs | Calculate model error rates |
citrus.version | Get Citrus package version |
plot.citrus.full.result | Plot a citrus.full.result |
plot.citrus.regressionResult | Plot results of a Citrus regression analysis |
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