Files in nriddiford/svBreaks
Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/bpRegioner.R
R/dist2motif.R
R/dist2motif2.R
R/featureEnrichment.R
R/geneEnrichment.R
R/getData.R
R/mechanims.R
R/misc.R
R/notch.R
R/rainfall.R
R/regionEnrichment.R
R/sizeDist.R
R/summary.R
R/utils.R
README.md
_pkgdown.yml
docs/authors.html
docs/docsearch.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Volcano.html
docs/reference/bootStrap.html
docs/reference/bpAllGenes.html
docs/reference/bpChromDist.html
docs/reference/bpFeatureEnrichment.html
docs/reference/bpFeatureEnrichmentPlot.html
docs/reference/bpFeatures.html
docs/reference/bpGenAll.html
docs/reference/bpGeneEnrichment.html
docs/reference/bpGeneEnrichmentPlot.html
docs/reference/bpRainfall.html
docs/reference/bpRegionEnrichment.html
docs/reference/bpRegionEnrichmentPlot.html
docs/reference/bpSim.html
docs/reference/bpStats.html
docs/reference/cleanTheme.html
docs/reference/delsRegionEnrichment.html
docs/reference/dist2Motif.html
docs/reference/distOverlay.html
docs/reference/featureDensity.html
docs/reference/generateData.html
docs/reference/genomeHits.html
docs/reference/genotypeTypeCount.html
docs/reference/getData.html
docs/reference/ggVolcano.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/mergeOverlaps.html
docs/reference/notchDels.html
docs/reference/notchFilt.html
docs/reference/notchHits.html
docs/reference/plotMonteCarlo.html
docs/reference/plotdistanceOverlay.html
docs/reference/setCols.html
docs/reference/simSig.html
docs/reference/sizeDist.html
docs/reference/slideTheme.html
docs/reference/subtractUnmappable.html
docs/reference/svTypes.html
docs/reference/svsbySample.html
docs/reference/typeLen.html
docs/reference/typeLenCount.html
docs/reference/writeBed.html
inst/extdata/Buchon_summary_ISCs.txt
inst/extdata/gene_lengths.txt
inst/extdata/intervals.bed
man/Volcano.Rd
man/bpAllGenes.Rd
man/bpFeatureEnrichment.Rd
man/bpFeatureEnrichmentPlot.Rd
man/bpFeatures.Rd
man/bpGeneEnrichment.Rd
man/bpGeneEnrichmentPlot.Rd
man/bpRainfall.Rd
man/bpRegionEnrichment.Rd
man/bpRegionEnrichmentPlot.Rd
man/bpRegioneR.Rd
man/bpSim.Rd
man/bpStats.Rd
man/cleanTheme.Rd
man/dist2Motif.Rd
man/dist2motif2.Rd
man/distOverlay.Rd
man/distOverlay2.Rd
man/featureDensity.Rd
man/geneHit.Rd
man/generateData.Rd
man/generateData2.Rd
man/genesbySample.Rd
man/genomeHits.Rd
man/genotypeTypeCount.Rd
man/getData.Rd
man/getMissingSamples.Rd
man/ggVolcano.Rd
man/hello.Rd
man/mechansimSize.Rd
man/mergeOverlaps.Rd
man/micromologyPlot.Rd
man/notchFilt.Rd
man/notchHits.Rd
man/plotMonteCarlo.Rd
man/plot_bpRegioner.Rd
man/plotdistanceOverlay.Rd
man/plotdistanceOverlay2.Rd
man/setCols.Rd
man/showSamples.Rd
man/simSig.Rd
man/simSig2.Rd
man/sizeDist.Rd
man/slideTheme.Rd
man/snv_colours.Rd
man/subtractUnmappable.Rd
man/svTypes.Rd
man/sv_colours.Rd
man/svsbySample.Rd
man/swapSampleNames.Rd
man/tally_hits.Rd
man/transform_types.Rd
man/writeBed.Rd
regions.bed
svBreaks.Rproj
